Documentation

MAAGE Documentation

Comprehensive guides, tutorials, and reference materials for the Midwest Alliance for Applied Genomic Epidemiology platform.

Getting Started

New to MAAGE? Start here to learn the basics and get your environment set up for genomic analysis.

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Data & Searches

Learn how to search, filter, and access genomic data across the MAAGE platform.

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Analysis Tools

Discover the suite of genomic analysis tools available on the MAAGE platform.

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Workspaces

Learn how to use workspaces to organize your data, analyses, and collaborate with others.

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API Reference

Comprehensive documentation for the MAAGE API to integrate with your own applications.

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Community

Connect with the MAAGE community and find resources for collaboration and knowledge sharing.

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Featured Documentation

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Getting Started

Quick Start Guide: From Zero to Analysis in 15 Minutes

A step-by-step guide to get you up and running with MAAGE quickly, from account creation to your first genomic analysis.

Updated 3 days ago5 min read
Tutorials

Comparative Genomics: Analyzing Pathogen Evolution

Learn how to use MAAGE's comparative genomics tools to track pathogen evolution and identify key genetic changes.

Updated 1 week ago12 min read
API

Getting Started with the MAAGE API

An introduction to the MAAGE API, including authentication, basic requests, and common use cases for integration.

Updated 2 weeks ago8 min read

Video Tutorials

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MAAGE Platform Overview

A comprehensive tour of the MAAGE platform and its key features.

8:24

Genomic Analysis Workflow

Step-by-step guide to analyzing genomic data using MAAGE's analysis tools.

12:37

Data Visualization Techniques

Learn how to create effective visualizations of genomic data for analysis and reporting.

10:15

Additional Resources

Documentation PDF

Download the complete MAAGE documentation for offline reference.

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Community Forum

Join our community forum to ask questions, share insights, and connect with other MAAGE users.

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Office Hours

Join our weekly office hours to get live help from the MAAGE team.

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