Tools & Services

MAAGE provides a comprehensive suite of bioinformatics tools and services for genomic epidemiology research. Our platform integrates cutting-edge technologies to support pathogen surveillance, outbreak detection, and genomic analysis.

Sequence Analysis

BLAST
Sequence similarity search
Multiple Sequence Alignment
Align multiple sequences
Genome Assembly
De novo and reference-based assembly
Genome Annotation
Identify and annotate genomic features

View All Sequence Tools

Genomic Surveillance

Variant Detection
Identify genomic variants
Transmission Analysis
Track pathogen transmission
AMR Prediction
Antimicrobial resistance analysis
Outbreak Detection
Early warning system

View All Surveillance Tools

Data Visualization

Interactive Dashboards
Customizable data visualization
Phylogenetic Trees
Interactive evolutionary trees
Geospatial Mapping
Geographic distribution visualization
Real-time Monitoring
Live data tracking and alerts

View All Visualization Tools

Data Management

Private Workspaces
Secure data storage and management
Data Sharing
Controlled access sharing
Data Privacy Controls
Customizable privacy settings
Bulk Data Operations
Upload, download, and process data

View All Data Management Tools

API & Integration

REST API
Programmatic access to MAAGE data
Command Line Interface
CLI tools for automation
Workflow Integration
Connect with external pipelines
Data Exchange
Import/export with partner systems

View All API Documentation

Training & Resources

Tutorials
Step-by-step guides
Documentation
Comprehensive user guides
Workshops
In-person and virtual training
Community Forum
User discussions and support

View All Resources

Featured Tools

BLAST

Search our curated database of pathogen genomes to identify sequence similarities and discover related strains.

Try Pathogen BLAST

Transmission Tracker

Visualize and analyze pathogen transmission patterns using genomic data and epidemiological information.

Explore Transmission Tracker

Outbreak Dashboard

Monitor active outbreaks with real-time data visualization, alerts, and predictive analytics.

View Outbreak Dashboard