SARS-CoV-2 Surveillance
Private
Ongoing surveillance of SARS-CoV-2 variants in the Midwest region, tracking mutations and spread patterns.
Created: Oct 15, 2023, 02:30 PM
Last updated: Apr 10, 2024, 09:45 AM
Files
| Name | Type | Size | Last Updated | Actions |
|---|---|---|---|---|
midwest_samples_batch1.fastq | sequence | 2.4 GB | Apr 10, 2024, 09:45 AM | |
midwest_samples_batch2.fastq | sequence | 1.8 GB | Apr 5, 2024, 11:20 AM | |
reference_genome.fasta | reference | 12 MB | Oct 15, 2023, 02:30 PM | |
variant_annotations.gff | annotation | 45 MB | Mar 22, 2024, 08:15 AM | |
metadata.csv | metadata | 8 MB | Apr 1, 2024, 01:40 PM |
Analyses
Variant Calling - Batch 1
Completed
Type: variant-calling
Started: Apr 10, 2024, 10:30 AM
Completed: Apr 10, 2024, 11:45 AM
Results:
variants.vcf
120 MB
coverage_report.pdf
5 MB
Phylogenetic Analysis
Running
Type: phylogeny
Started: Apr 11, 2024, 08:15 AM
65% complete
Mutation Impact Analysis
Queued
Type: functional-analysis
Started: Apr 11, 2024, 09:30 AM
Activity History
Uploaded midwest_samples_batch2.fastq
Apr 5, 2024, 11:20 AMby Sarah Johnson
Started Variant Calling - Batch 1
Apr 10, 2024, 10:30 AMby Michael Chen
Completed Variant Calling - Batch 1
Apr 10, 2024, 11:45 AMby System
Added Emily Rodriguez as Viewer
Apr 8, 2024, 02:10 PMby Sarah Johnson
Started Phylogenetic Analysis
Apr 11, 2024, 08:15 AMby Sarah Johnson
