The MAAGE platform is currently under development. Expect frequent updates with occasional downtime.

Midwest Alliance for
Applied Genomic Epidemiology

The Midwest Alliance for Applied Genomic Epidemiology (MAAGE) aims to develop a genomic surveillance platform to enhance infectious disease detection and tracking while providing educational resources for public health and healthcare professionals.

Search Genomic Data

Popular:SARS-CoV-2Influenza AMpoxSalmonellaListeria
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Analyze Data

Upload and analyze your genomic data in a secure private workspace with our comprehensive suite of tools.

Search

  • Taxa
  • Genomes
  • Features
  • Specialty Genes
  • View All

Analyze

  • Assembly
  • Annotation
  • BLAST
  • MSA
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Data

  • Access Workspace
  • Save Search Results
  • Upload Data
  • Analysis Jobs
  • Share & Publish

Access

  • CLI tools
  • Data API
  • File Transfers
  • Public Workspaces
  • MAAGE Workshop

Active Outbreaks

Mpox

High Alert
New Cases
+124 +15%
Regions
12
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A/H5N1

Moderate
New Cases
+87 +8%
Regions
9
View Dashboard

SARS-CoV-2

Ongoing
New Cases
+215 -3%
Regions
All
View Dashboard
View All Outbreaks

Quick Links

Documentation

Guides & references

My Workspace

Projects & analyses

Advanced Search

Complex queries

Tools

Analysis tools

Genome Assembly

Assemble genomes

Core Genome MLST

Sequence typing

SNP Analysis

Identify polymorphisms

Dashboard

Analytics overview

Upcoming Events

APR
25

Genomic Surveillance Webinar

2:00 PM - 3:30 PM CT

Virtual•Free
MAY
20

H5N1 Research Update

11:00 AM - 12:00 PM CT

Virtual•Free
MAY
25

MAAGE Workshop Series

9:00 AM - 4:00 PM CT

Chicago, IL•Registration Required
JUN
15

Pathogen Genomics Conference

8:00 AM - 5:00 PM CT

Minneapolis, MN•$200
JUN
28

Bioinformatics Tools Workshop

1:00 PM - 4:00 PM CT

Virtual•Free
JUL
10

Public Health Data Integration Symposium

10:00 AM - 3:00 PM CT

Madison, WI•$75
View All Events

Latest News

PublicationMarch 15, 2024

New H5N1 Surveillance Tools

MAAGE is developing a new surveillance platform that enables real-time tracking of H5N1 influenza variants across the Midwest.

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ResearchMarch 5, 2024

New Research Paper on SARS-CoV-2 Variant Tracking

MAAGE researchers published a new paper on improved methods for tracking SARS-CoV-2 variants.

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AnnouncementFebruary 28, 2024

MAAGE Partners with State Health Departments

New partnerships will expand genomic surveillance capabilities across five additional Midwestern states.

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UpdateFebruary 20, 2024

Platform Update: New Genomic Analysis Tools

We've added three new genomic analysis tools to the MAAGE platform, enhancing our capabilities for pathogen surveillance and characterization.

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ResearchFebruary 15, 2024

Collaborative Study on Emerging Pathogens

MAAGE researchers have published findings from a collaborative study on emerging pathogens in urban environments across the Midwest region.

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EventFebruary 10, 2024

Successful Completion of Winter Workshop Series

Over 200 public health professionals participated in our winter workshop series on genomic epidemiology techniques and applications.

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View All News